Gene detail

Detailed information of OS493_006657-T1 in Lophelia pertusa

Genomic Location: scaffold_14:403442...416885
NR annotation: KAJ7386652.1, Ceramide synthase 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMG9	Ceramide synthase 6 OS=Homo sapiens OX=9606 GN=CERS6 PE=1 SV=1
Q8C172	Ceramide synthase 6 OS=Mus musculus OX=10090 GN=Cers6 PE=1 SV=1
Q8N5B7	Ceramide synthase 5 OS=Homo sapiens OX=9606 GN=CERS5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03798 all species →	TRAM_LAG1_CLN8	TLC domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006634 all species →	Domain	TRAM/LAG1/CLN8 homology domain	Interproscan
IPR016439 all species →	Family	Sphingosine N-acyltransferase Lag1/Lac1-like	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12560 all species →	LONGEVITY ASSURANCE FACTOR 1 LAG1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0050291 all species →	Molecular Function	sphingosine N-acyltransferase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006657-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006657-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

80.0Max TPM

18.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.97	16.65
polyp at pH7 6	18	18	13.71	22.32
coral polyp · control treatment	16	16	27.34	80.03
coral polyp · oil and dispersant treatment	16	16	23.15	56.02
coral polyp · oil treatment	16	16	18.38	48.71
coral polyp · dispersant treatment	16	16	25.02	45.38
Polyp	10	10	9.07	22.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.41
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.71
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.42

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.