Gene detail

Detailed information of OS493_006658-T1 in Lophelia pertusa

Genomic Location: scaffold_14:417173...430518
NR annotation: KAJ7386653.1, Bardet-Biedl syndrome 5 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZQ9	BBSome complex member BBS5 OS=Mus musculus OX=10090 GN=Bbs5 PE=1 SV=1
Q7ZWB7	BBSome complex member BBS5 OS=Danio rerio OX=7955 GN=bbs5 PE=2 SV=1
Q8N3I7	BBSome complex member BBS5 OS=Homo sapiens OX=9606 GN=BBS5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005778 (this species only)
Ubiquitin family	UBD\|PH\|GLUE · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07289 all species →	BBL5	Bardet-Biedl syndrome 5 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014003 all species →	Repeat	DM16 repeat	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR030804 all species →	Family	Bardet-Biedl syndrome 5 protein/sex-determination protein fem-3	Interproscan
IPR006606 all species →	Family	Bardet-Biedl syndrome 5 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21351 all species →	BARDET-BIEDL SYNDROME PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16748	BBS5; Bardet-Biedl syndrome 5 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006658-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

62.4Max TPM

20.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.58	27.45
polyp at pH7 6	18	18	17.54	24.27
coral polyp · control treatment	16	16	26.53	54.11
coral polyp · oil and dispersant treatment	16	16	23.69	62.39
coral polyp · oil treatment	16	16	25.19	39.67
coral polyp · dispersant treatment	16	16	16.40	29.25
Polyp	10	9	13.35	23.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.