Gene detail

Detailed information of OS493_006659-T1 in Lophelia pertusa

Genomic Location: scaffold_14:447780...454233
NR annotation: KAJ7386654.1, ORM1-like protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29RQ9	ORM1-like protein 1 OS=Bos taurus OX=9913 GN=ORMDL1 PE=2 SV=1
Q9P0S3	ORM1-like protein 1 OS=Homo sapiens OX=9606 GN=ORMDL1 PE=1 SV=1
Q5R8X5	ORM1-like protein 1 OS=Pongo abelii OX=9601 GN=ORMDL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008769 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04061 all species →	ORMDL	ORMDL family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007203 all species →	Family	ORMDL family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12665 all species →	ORMDL PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0006672 all species →	Biological Process	ceramide metabolic process	Interproscan
GO:0030148 all species →	Biological Process	sphingolipid biosynthetic process	Interproscan
GO:0035339 all species →	Cellular Component	obsolete SPOTS complex	Interproscan
GO:0090156 all species →	Biological Process	intracellular sphingolipid homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006659-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006659-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

114.7Max TPM

31.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.95	25.43
polyp at pH7 6	18	17	17.70	31.30
coral polyp · control treatment	16	16	33.93	63.62
coral polyp · oil and dispersant treatment	16	16	66.43	114.74
coral polyp · oil treatment	16	16	29.57	51.47
coral polyp · dispersant treatment	16	16	44.35	112.17
Polyp	10	10	9.65	14.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.43
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.47
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.