Gene detail

Detailed information of OS493_006696-T1 in Lophelia pertusa

Genomic Location: scaffold_14:1101360...1110524
NR annotation: KAJ7386687.1, Oxidoreductase NAD-binding domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KP77	Oxidoreductase NAD-binding domain-containing protein 1 OS=Danio rerio OX=7955 GN=oxnad1 PE=2 SV=1
Q7T0X7	Oxidoreductase NAD-binding domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=oxnad1 PE=2 SV=1
A4IHY0	Oxidoreductase NAD-binding domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=oxnad1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR052128 all species →	Family	Oxidoreductase NAD-binding domain-containing protein	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46505 all species →	OXIDOREDUCTASE NAD-BINDING DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00326	CYB5R; cytochrome-b5 reductase	EC:1.6.2.2	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006696-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

22.8Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.82	12.25
polyp at pH7 6	18	18	6.93	9.79
coral polyp · control treatment	16	16	12.92	21.14
coral polyp · oil and dispersant treatment	16	16	9.45	20.10
coral polyp · oil treatment	16	16	13.69	22.41
coral polyp · dispersant treatment	16	16	6.57	11.27
Polyp	10	10	12.56	22.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.