Gene detail

Detailed information of OS493_006709-T1 in Lophelia pertusa

Genomic Location: scaffold_14:1320595...1328473
NR annotation: KAJ7386698.1, hypothetical protein OS493_006709 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35331	Neuronal cell adhesion molecule OS=Gallus gallus OX=9031 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45889 all species →	IG-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_006709-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05077	IL13RA2, CD213A2; interleukin 13 receptor alpha-2	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006709-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

79TPM > 0

7Conditions

25.6Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	1.27	5.62
polyp at pH7 6	18	4	0.28	2.27
coral polyp · control treatment	16	15	3.28	10.75
coral polyp · oil and dispersant treatment	16	14	6.48	22.66
coral polyp · oil treatment	16	14	5.22	25.57
coral polyp · dispersant treatment	16	14	4.22	17.97
Polyp	10	7	2.61	9.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.