Gene detail

Detailed information of OS493_006829-T1 in Lophelia pertusa

Genomic Location: scaffold_14:2642171...2644495
NR annotation: KAJ7386800.1, hypothetical protein OS493_006829 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16715 all species →	CDPS	Cyclodipeptide synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038622 all species →	Homologous_superfamily	Cyclodipeptide synthase superfamily	Interproscan
IPR030903 all species →	Family	Cyclodipeptide synthase	Interproscan

PANTHER

No PANTHER signature was detected for OS493_006829-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0016755 all species →	Molecular Function	aminoacyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006829-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006829-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

133.8Max TPM

15.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.48	12.61
polyp at pH7 6	18	12	1.91	8.76
coral polyp · control treatment	16	16	21.60	83.68
coral polyp · oil and dispersant treatment	16	16	21.91	133.76
coral polyp · oil treatment	16	16	13.46	80.81
coral polyp · dispersant treatment	16	16	29.54	83.49
Polyp	10	10	16.33	103.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	103.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.