Gene detail

Detailed information of OS493_006955-T1 in Lophelia pertusa

Genomic Location: scaffold_14:4372331...4377087
NR annotation: KAJ7386920.1, Akirin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GQB5	Akirin-2 OS=Xenopus laevis OX=8355 GN=akirin2.S PE=1 SV=1
A8YXY8	Akirin-2 OS=Bos taurus OX=9913 GN=AKIRIN2 PE=2 SV=1
B1AXD8	Akirin-2 OS=Mus musculus OX=10090 GN=Akirin2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008802 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_006955-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR024132 all species →	Family	Akirin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13293 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045089 all species →	Biological Process	positive regulation of innate immune response	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_006955-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_006955-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

144.9Max TPM

59.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.47	60.64
polyp at pH7 6	18	18	48.66	62.38
coral polyp · control treatment	16	16	62.93	144.90
coral polyp · oil and dispersant treatment	16	16	81.14	111.77
coral polyp · oil treatment	16	16	56.44	67.98
coral polyp · dispersant treatment	16	16	62.85	95.85
Polyp	10	10	62.16	82.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	82.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	79.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	73.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	70.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	63.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	54.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	53.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	51.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	49.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	42.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.