Detailed information of OS493_007166-T1 in Lophelia pertusa

Genomic Location: scaffold_15:2486593...2507219
NR annotation: KAJ7380785.1, LIM domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BT23LIM domain-containing protein 2 OS=Homo sapiens OX=9606 GN=LIMD2 PE=1 SV=1
Q1LZA7LIM domain-containing protein 2 OS=Bos taurus OX=9913 GN=LIMD2 PE=2 SV=1
Q4KM31LIM domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Limd2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003600 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00412
all species →		LIMLIM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001781
all species →		DomainZinc finger, LIM-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24206
all species →		OS06G0237300 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0015629
all species →		Cellular Componentactin cytoskeletonInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan
GO:0051017
all species →		Biological Processactin filament bundle assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_007166-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_007166-T1 global co-expression network
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