Gene detail

Detailed information of OS493_007177-T1 in Lophelia pertusa

Genomic Location: scaffold_15:2707582...2709663
NR annotation: KAJ7380795.1, hypothetical protein OS493_007177 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12007	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ivd PE=1 SV=2
Q3SZI8	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=IVD PE=2 SV=1
Q5RBD5	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii OX=9601 GN=IVD PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004639 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006552 all species →	Biological Process	L-leucine catabolic process	Interproscan
GO:0008470 all species →	Molecular Function	3-methylbutanoyl-CoA dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007177-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007177-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

63.0Max TPM

22.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.91	37.91
polyp at pH7 6	18	18	12.16	19.99
coral polyp · control treatment	16	16	28.22	55.86
coral polyp · oil and dispersant treatment	16	16	27.43	51.97
coral polyp · oil treatment	16	16	26.46	42.18
coral polyp · dispersant treatment	16	16	20.28	31.04
Polyp	10	9	31.12	63.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	63.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	56.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	47.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	42.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.