Gene detail

Detailed information of OS493_007188-T1 in Lophelia pertusa

Genomic Location: scaffold_15:2899399...2908065
NR annotation: KAJ7380806.1, ATPase AAA domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q503W7	Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1b PE=2 SV=2
F6QV99	Outer mitochondrial transmembrane helix translocase OS=Bos taurus OX=9913 GN=ATAD1 PE=2 SV=2
Q8NBU5	Outer mitochondrial transmembrane helix translocase OS=Homo sapiens OX=9606 GN=ATAD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR051701 all species →	Family	Mitochondrial Outer Membrane Translocase MSP1 Subfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45644 all species →	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0140570 all species →	Biological Process	extraction of mislocalized protein from mitochondrial outer membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22530	ATAD1, MSP1; outer mitochondrial transmembrane helix translocase	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007188-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

79.9Max TPM

49.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	48.00	73.92
polyp at pH7 6	18	18	44.45	61.51
coral polyp · control treatment	16	16	55.06	79.54
coral polyp · oil and dispersant treatment	16	16	62.64	79.88
coral polyp · oil treatment	16	16	50.29	67.75
coral polyp · dispersant treatment	16	16	38.95	63.54
Polyp	10	10	50.51	71.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	71.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	61.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	60.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	53.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	47.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	43.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	37.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.65

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.