Gene detail

Detailed information of OS493_007220-T1 in Lophelia pertusa

Genomic Location: scaffold_15:3368956...3393329
NR annotation: KAJ7380830.1, UDP-N-acetylglucosamine pyrophosphorylase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91YN5	UDP-N-acetylhexosamine pyrophosphorylase OS=Mus musculus OX=10090 GN=Uap1 PE=1 SV=1
Q16222	UDP-N-acetylhexosamine pyrophosphorylase OS=Homo sapiens OX=9606 GN=UAP1 PE=1 SV=3
Q28CH3	UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Xenopus tropicalis OX=8364 GN=uap1l1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01704 all species →	UDPGP	UTP--glucose-1-phosphate uridylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002618 all species →	Family	UDPGP family	Interproscan
IPR039741 all species →	Family	UDP-sugar pyrophosphorylase	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11952 all species →	UDP- GLUCOSE PYROPHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070569 all species →	Molecular Function	uridylyltransferase activity	Interproscan
GO:0003977 all species →	Molecular Function	UDP-N-acetylglucosamine diphosphorylase activity	Interproscan
GO:0006048 all species →	Biological Process	UDP-N-acetylglucosamine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00972	UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase	EC:2.7.7.23 EC:2.7.7.83	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007220-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

46.4Max TPM

19.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.67	46.38
polyp at pH7 6	18	18	21.69	37.96
coral polyp · control treatment	16	16	25.08	38.42
coral polyp · oil and dispersant treatment	16	16	19.16	35.52
coral polyp · oil treatment	16	16	18.61	36.35
coral polyp · dispersant treatment	16	16	18.05	36.18
Polyp	10	9	7.15	14.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.