Gene detail

Detailed information of OS493_007232-T1 in Lophelia pertusa

Genomic Location: scaffold_15:3622490...3640020
NR annotation: KAJ7380842.1, hypothetical protein OS493_007232 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66J69	E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis OX=8355 GN=rnf2-a PE=2 SV=1
Q803I4	E3 ubiquitin-protein ligase RING2 OS=Danio rerio OX=7955 GN=rnf2 PE=2 SV=1
Q5R9J5	E3 ubiquitin-protein ligase RING2 OS=Pongo abelii OX=9601 GN=RNF2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006742 (this species only)
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042741 all species →	Domain	RING1 , RING finger, HC subclass	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR043540 all species →	Family	E3 ubiquitin-protein ligase RING1/RING2	Interproscan
IPR032443 all species →	Domain	RAWUL domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46076 all species →	E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0031519 all species →	Cellular Component	PcG protein complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10695	RNF1_2; E3 ubiquitin-protein ligase RNF1/2	EC:2.3.2.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_007232-T1 global co-expression network