Gene detail

Detailed information of OS493_007261-T1 in Lophelia pertusa

Genomic Location: scaffold_15:4195087...4195389
NR annotation: KAJ7380863.1, acyl-coenzyme A thioesterase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63276	Bile acid-CoA:amino acid N-acyltransferase OS=Rattus norvegicus OX=10116 GN=Baat PE=1 SV=2
O55137	Acyl-coenzyme A thioesterase 1 OS=Mus musculus OX=10090 GN=Acot1 PE=1 SV=1
Q9QYR7	Acyl-coenzyme A thioesterase 3 OS=Mus musculus OX=10090 GN=Acot3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04775 all species →	Bile_Hydr_Trans	Acyl-CoA thioester hydrolase/BAAT N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006862 all species →	Domain	Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase	Interproscan
IPR042490 all species →	Homologous_superfamily	Acyl-CoA thioester hydrolase/BAAT, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10824 all species →	ACYL-COENZYME A THIOESTERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0006637 all species →	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0047617 all species →	Molecular Function	fatty acyl-CoA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007261-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007261-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

8.1Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.70	7.01
polyp at pH7 6	18	15	2.95	8.05
coral polyp · control treatment	16	16	1.54	4.71
coral polyp · oil and dispersant treatment	16	14	0.76	3.80
coral polyp · oil treatment	16	14	0.97	3.09
coral polyp · dispersant treatment	16	14	1.77	3.48
Polyp	10	9	0.87	2.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.95
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.