Gene detail

Detailed information of OS493_007298-T1 in Lophelia pertusa

Genomic Location: scaffold_16:453437...455969
NR annotation: KAJ7374224.1, hypothetical protein OS493_007298 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08984	Delta(14)-sterol reductase LBR OS=Rattus norvegicus OX=10116 GN=Lbr PE=1 SV=1
P23913	Delta(14)-sterol reductase LBR OS=Gallus gallus OX=9031 GN=LBR PE=1 SV=1
Q3U9G9	Delta(14)-sterol reductase LBR OS=Mus musculus OX=10090 GN=Lbr PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001865 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01222 all species →	ERG4_ERG24	Ergosterol biosynthesis ERG4/ERG24 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001171 all species →	Family	Sterol biosynthesis ERG24/DHCR-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21257 all species →	DELTA(14)-STEROL REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005637 all species →	Cellular Component	nuclear inner membrane	Interproscan
GO:0006695 all species →	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016126 all species →	Biological Process	sterol biosynthetic process	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0050613 all species →	Molecular Function	delta14-sterol reductase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007298-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007298-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

96TPM > 0

7Conditions

49.4Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	2.46	6.66
polyp at pH7 6	18	14	2.80	7.42
coral polyp · control treatment	16	16	6.90	49.42
coral polyp · oil and dispersant treatment	16	15	5.03	34.91
coral polyp · oil treatment	16	15	3.91	12.37
coral polyp · dispersant treatment	16	15	5.91	11.57
Polyp	10	7	1.72	5.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.