Gene detail

Detailed information of OS493_007299-T1 in Lophelia pertusa

Genomic Location: scaffold_16:457226...458630
NR annotation: KAJ7374225.1, Delta(14)-sterol reductase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WMV1	Delta(14)-sterol reductase TM7SF2 OS=Bos taurus OX=9913 GN=TM7SF2 PE=1 SV=1
O76062	Delta(14)-sterol reductase TM7SF2 OS=Homo sapiens OX=9606 GN=TM7SF2 PE=1 SV=3
Q71KT5	Delta(14)-sterol reductase TM7SF2 OS=Mus musculus OX=10090 GN=Tm7sf2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001865 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01222 all species →	ERG4_ERG24	Ergosterol biosynthesis ERG4/ERG24 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001171 all species →	Family	Sterol biosynthesis ERG24/DHCR-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21257 all species →	DELTA(14)-STEROL REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016126 all species →	Biological Process	sterol biosynthetic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan
GO:0005637 all species →	Cellular Component	nuclear inner membrane	Interproscan
GO:0006695 all species →	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0050613 all species →	Molecular Function	delta14-sterol reductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007299-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007299-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

77.6Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.39	16.17
polyp at pH7 6	18	16	7.24	24.21
coral polyp · control treatment	16	16	11.70	77.64
coral polyp · oil and dispersant treatment	16	16	8.70	61.89
coral polyp · oil treatment	16	15	8.02	28.50
coral polyp · dispersant treatment	16	15	8.38	21.82
Polyp	10	8	3.20	8.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.