Gene detail

Detailed information of OS493_007322-T1 in Lophelia pertusa

Genomic Location: scaffold_16:909257...919706
NR annotation: KAJ7374243.1, hypothetical protein OS493_007322 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008763 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05721 all species →	PhyH	Phytanoyl-CoA dioxygenase (PhyH)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008775 all species →	Family	Phytanoyl-CoA dioxygenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20883 all species →	PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_007322-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007322-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007322-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.3Max TPM

18.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.09	43.27
polyp at pH7 6	18	18	29.07	41.56
coral polyp · control treatment	16	16	17.01	33.22
coral polyp · oil and dispersant treatment	16	16	15.80	36.84
coral polyp · oil treatment	16	16	15.23	34.16
coral polyp · dispersant treatment	16	16	12.17	23.83
Polyp	10	10	10.93	35.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.01
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.51
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.56
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	35.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.