Gene detail

Detailed information of OS493_007328-T1 in Lophelia pertusa

Genomic Location: scaffold_16:964191...964979
NR annotation: KAJ7374249.1, hypothetical protein OS493_007328 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0C2SRU0	Decarboxylase iboD OS=Amanita muscaria (strain Koide BX008) OX=946122 GN=iboD PE=2 SV=1
P0DPA6	L-tryptophan decarboxylase OS=Psilocybe cubensis OX=181762 GN=psiD PE=1 SV=1
A0A286LEZ8	L-tryptophan decarboxylase OS=Psilocybe cyanescens OX=93625 GN=psiD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001281 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02666 all species →	PS_Dcarbxylase	Phosphatidylserine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003817 all species →	Family	Phosphatidylserine decarboxylase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10067 all species →	PHOSPHATIDYLSERINE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004609 all species →	Molecular Function	phosphatidylserine decarboxylase activity	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01613	psd, PISD; phosphatidylserine decarboxylase	EC:4.1.1.65	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007328-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

50.9Max TPM

16.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.03	29.79
polyp at pH7 6	18	18	14.46	37.52
coral polyp · control treatment	16	16	18.89	37.85
coral polyp · oil and dispersant treatment	16	16	14.68	33.43
coral polyp · oil treatment	16	16	20.43	50.89
coral polyp · dispersant treatment	16	16	18.97	47.77
Polyp	10	10	14.10	25.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.16
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.