Gene detail

Detailed information of OS493_007329-T1 in Lophelia pertusa

Genomic Location: scaffold_16:965127...965552
NR annotation: KAJ7374250.1, hypothetical protein OS493_007329 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001300 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12588 all species →	PSDC	Phophatidylserine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022237 all species →	Domain	L-tryptophan decarboxylase PsiD-like	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_007329-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_007329-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007329-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007329-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

90.4Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.58	18.50
polyp at pH7 6	18	17	7.56	16.55
coral polyp · control treatment	16	16	20.39	49.17
coral polyp · oil and dispersant treatment	16	15	17.40	56.89
coral polyp · oil treatment	16	16	20.97	73.03
coral polyp · dispersant treatment	16	15	31.22	90.37
Polyp	10	10	9.76	29.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.52

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.