Gene detail

Detailed information of OS493_007335-T1 in Lophelia pertusa

Genomic Location: scaffold_16:992732...996529
NR annotation: KAJ7374255.1, WD40 repeat protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005793 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06462 all species →	Hyd_WA	Propeller	Repeat	Interproscan
PF19193 all species →	Tectonin	Tectonin domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006624 all species →	Repeat	Beta-propeller repeat TECPR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23287 all species →	RUBY-EYE2-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032527 all species →	Biological Process	protein exit from endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007335-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007335-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

15.7Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.52	9.93
polyp at pH7 6	18	18	5.75	7.89
coral polyp · control treatment	16	16	8.38	12.19
coral polyp · oil and dispersant treatment	16	16	6.21	15.70
coral polyp · oil treatment	16	16	7.94	10.65
coral polyp · dispersant treatment	16	16	4.77	7.94
Polyp	10	10	3.94	6.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.