Gene detail

Detailed information of OS493_007394-T1 in Lophelia pertusa

Genomic Location: scaffold_16:1861147...1873983
NR annotation: KAJ7374308.1, hypothetical protein OS493_007394 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_007394-T1

ATGGCAGCAGTTACCTTCCGTATCCTTGTGTTTTTATCCTCCTGTATCGGCGTTTCTTCTGCTTCCACACCAACGATAATTTCCAACCCGGACACGTACGAAGCTCAAGATGGCATTTATATTACAGAACACCGTGTTGACGATAGTGGCACTAAGTGGACCCAAAAAGCGAGCCTGGGAAGGCTTGAAGTTCTGGCGAATGACATGGCTCTTAATCTGCCTTTTGAAAGCTGCATGGAAGAGAAATTAACGAGGCAGAATAAATATACAGATCATCTTGGACAAAACTCAAAGTTTAAAGAAATACACCAGCAAGCTGGATTCCAGCATGTGCACCGCACAAGCAATGCTATCAGTCCTCACTGTGTGTTTGATGTGGTAATACCTTATCAAAACTCGTCCCACCAAGAGCGGATTCCTGGACAATACTGCGCTCCTGAGCACATGACTGGTGGAGCGGCAGTTGGAGATTACAATGGAGATGGGATGGAAGACCTTTACTTTACTGTGTTTCATAGCACGAGCGTCCTGTACAAAAACAACGGTGATGGAACATTTACTGACGTCACAAAGGACGCAGGTATCGGACCCAGCCGTCTCGCCAACGGTGCAATCTGGGTAGACGTTGACCAGGACGGAGATCTGGATCTGTATGTGACAACAGTGGGCGATACTAGGCATTACTTGTATATTAATTACGGAGGTCACTTTAAGGAAGAAGCTATGCAGAGAAACTGTTCAATGCAAACGAGTGACAAACGAAAGCTCTCTGGAATGACACCAAGCGTTGGTGATTTTAATCACGACGGGTTTGCTGACATTTATGTGACAGAATGGCTTCCGCACTCTTTGGGAAAGCCATCAGCTTCGAGACTTCTGAGGAACATGGGTCACCGGGCACCTGGCTATTTTCAAGACGTCACTATGGACGCAGGGGTTGATATGGATGGCTATTTTAACGGTTCGGCGCTCAGTAAAGGAACATATACACTTGGCTCTTCATTTACAGACTTTGACAAAGATGGCTGGGTAGACCTTCTAGTGACGGCAGATTATGGTTATAGCAAAATGTTTTGGAACCAGAAAAACGGCACATTCATGGAGTGTACCCAATCTTGCGGCCTGGACGCAAAGCAGAACGCCAAAGGTCATGCAATAGGGGACTGGGACAACGATGGCCTCCTTGACTGGTTTTCTACCGCCATGTGGCAAAACCGTAGTGAATGTTCTATGTCTGGCTGCATGTATGTTAGCGGGGGAAACGTGCTCTTCCGTAATCGAGGAGGAAGGCAATTTGAAGAAGCCACAGACAAGGCTGGTGTGGAAAATGGAGGATTGGGGTGGGGAGCAGCATTACTGGACTTTGATAACAATGGATATGTGGATTTCATCACGAGCAGCGGAATTGATTTAAATAAGATGCATTTGTGGCAAAACCTTGGTGCCGGTCAAAACGGAAAAACCCAAGAGGTGTCTTCTTTGTATGGATTAAGCGGCACAGGAAAAGGACGGGGTCTGTTAAAGTGGGACTATGATGATGATGGTGACGAAGACATTGTAGTGTGTAATAACGTTGGAGCTCCGTTCTTCTACCAATATCAACAAAAAGAGCCAAACAATTGGATAAGAATACGTGTTGTACATCGGTGTCTTAAGAATCAACACAAGTTATGTGACAGCCTTGGTGCCCGTGTGCAAGTTATCATGGGAAATAACCACATACAGACACAAGAAATCGGTTCCAGTACACATTTCTTGGGTCAAAGCTCTCGTGTCGCTCATTTTGGACTGGGGCGAAACAGTGGTCATGTAACTGTTAATGTGACGTGGTCGTCTGGTGTCATGGTGACATACTCTAACGTGCCTCCTGATACAAGACTGCGAGTCGTACAGCCCAACATGTCCGATTCAGGGAAAACGTTTCCATATTCGTCCCTCAAAAAGTGTTTCTCTTTATACGTTACTGAGATTAATAAACAGCCATCTAAATCAAGAGTAACCATAAATTCAGATGGGAAAACAGTGGATTTGAAAATCAATCTTGGTGTAAAACTATCGGAGCTAAGCAACGAGACCTTCACATATACAGTGAGTGTGGTACCTAGTCCTGGTGGACAACCGCTGACCTCCAATACCACGTGTAATGTTATGTTTTCACGAAGCATTGCAAGTGACTGTAAGGACGGCAGGAAAATAGGACTGGTGCCGAGTGTTACAAATGACAGGCGTCTAGATGGTACCTCGAACAACAAGGATCACGTGCGGTTTGGTGCGGCACTGGAGGACGTAACACGTGATGCACCTGCCATGTACGCTGACGGAATCGCTTTGCCCGCGGGCGCTAACAGGCCCTCTCCAAGAAAAATCAGCAATGAGCTCTTTCAGCAGTTTCTGGCGCATGACACTGATTCGTCAAGTCAACTGCCAACTCGTGATTTTGATATTTTAAGTGACGTGAAGCTGCCTATCCCAGTTCCAAAGGTCAGTTCTATGAACATTTCAAATGGCTTTATCTATGTGTAG

Transcript

OS493_007394-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07593 all species →	UnbV_ASPIC	ASPIC and UnbV	Family	Interproscan
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR027039 all species →	Family	Cartilage acidic protein 1	Interproscan
IPR011519 all species →	Domain	ASPIC/UnbV	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16026 all species →	CARTILAGE ACIDIC PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007394-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_007394-T1 global co-expression network