Gene detail

Detailed information of OS493_007419-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2132043...2133956
NR annotation: KAJ7374331.1, hypothetical protein OS493_007419 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05458 all species →	Siva	Cd27 binding protein (Siva)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022773 all species →	Family	Siva	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14365 all species →	APOPTOSIS REGULATORY PROTEIN SIVA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005175 all species →	Molecular Function	CD27 receptor binding	Interproscan
GO:0097191 all species →	Biological Process	extrinsic apoptotic signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22744	SIVA1; apoptosis regulatory protein Siva	-	p53 signaling pathway	ko04115	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007419-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

24.2Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.00	14.57
polyp at pH7 6	18	18	5.83	9.47
coral polyp · control treatment	16	16	10.70	19.57
coral polyp · oil and dispersant treatment	16	16	13.57	24.21
coral polyp · oil treatment	16	16	10.09	15.36
coral polyp · dispersant treatment	16	16	7.19	11.22
Polyp	10	9	4.12	6.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.