Gene detail

Detailed information of OS493_007426-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2193586...2199668
NR annotation: KAJ7374337.1, hypothetical protein OS493_007426 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58242	Acid sphingomyelinase-like phosphodiesterase 3b OS=Mus musculus OX=10090 GN=Smpdl3b PE=1 SV=1
P49286	Melatonin receptor type 1B OS=Homo sapiens OX=9606 GN=MTNR1B PE=1 SV=1
Q8CIQ6	Melatonin receptor type 1B OS=Mus musculus OX=10090 GN=Mtnr1b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005136 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19272 all species →	ASMase_C	Acid sphingomyelin phosphodiesterase C-terminal region	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045473 all species →	Domain	Sphingomyelin phosphodiesterase, C-terminal domain	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24228 all species →	B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007426-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

31.8Max TPM

9.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.17	31.83
polyp at pH7 6	18	18	13.80	21.49
coral polyp · control treatment	16	16	5.71	11.26
coral polyp · oil and dispersant treatment	16	15	3.73	8.25
coral polyp · oil treatment	16	16	5.51	11.48
coral polyp · dispersant treatment	16	16	4.07	8.30
Polyp	10	10	9.71	24.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.99
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.