Gene detail

Detailed information of OS493_007447-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2516679...2524748
NR annotation: KAJ7374358.1, ADP-ribosylation factor-like protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36404	ADP-ribosylation factor-like protein 2 OS=Homo sapiens OX=9606 GN=ARL2 PE=1 SV=4
Q2TA37	ADP-ribosylation factor-like protein 2 OS=Bos taurus OX=9913 GN=ARL2 PE=1 SV=1
Q9D0J4	ADP-ribosylation factor-like protein 2 OS=Mus musculus OX=10090 GN=Arl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000273 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044612 all species →	Family	ADP-ribosylation factor-like protein 2/3	Interproscan
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR045873 all species →	Family	ADP-ribosylation factor-like protein 2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45697 all species →	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07943	ARL2; ADP-ribosylation factor-like protein 2	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007447-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

59.6Max TPM

15.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.37	18.96
polyp at pH7 6	18	18	14.63	23.00
coral polyp · control treatment	16	16	20.39	59.64
coral polyp · oil and dispersant treatment	16	16	18.30	51.18
coral polyp · oil treatment	16	16	17.50	27.12
coral polyp · dispersant treatment	16	16	14.16	24.76
Polyp	10	10	10.59	27.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.74

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.