Gene detail

Detailed information of OS493_007466-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2686660...2688153
NR annotation: KAJ7374369.1, hypothetical protein OS493_007466 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IUR5	Neudesin OS=Rattus norvegicus OX=10116 GN=Nenf PE=1 SV=1
Q9CQ45	Neudesin OS=Mus musculus OX=10090 GN=Nenf PE=1 SV=1
Q1JQA5	Neudesin OS=Bos taurus OX=9913 GN=NENF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010678 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050577 all species →	Family	Cytochrome b5/MAPR and VMP1 families	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10281 all species →	MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007466-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007466-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

30.3Max TPM

13.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.21	30.29
polyp at pH7 6	18	18	18.62	26.44
coral polyp · control treatment	16	16	13.47	25.68
coral polyp · oil and dispersant treatment	16	16	7.75	18.86
coral polyp · oil treatment	16	16	11.77	18.05
coral polyp · dispersant treatment	16	16	7.15	16.00
Polyp	10	10	14.41	27.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.41
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.