Gene detail

Detailed information of OS493_007484-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2894792...2896035
NR annotation: KAJ7374382.1, Zinc phosphodiesterase ELAC protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VEB6	Zinc phosphodiesterase ELAC protein 1 OS=Mus musculus OX=10090 GN=Elac1 PE=2 SV=1
Q9H777	Zinc phosphodiesterase ELAC protein 1 OS=Homo sapiens OX=9606 GN=ELAC1 PE=1 SV=2
Q29RY4	Zinc phosphodiesterase ELAC protein 1 OS=Bos taurus OX=9913 GN=ELAC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005375 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12706 all species →	Lactamase_B_2	Beta-lactamase superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR050094 all species →	Family	Zinc phosphodiesterase ELAC protein	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46018 all species →	ZINC PHOSPHODIESTERASE ELAC PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042781 all species →	Molecular Function	3'-tRNA processing endoribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007484-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007484-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.2Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.07	12.85
polyp at pH7 6	18	17	4.40	10.89
coral polyp · control treatment	16	16	5.22	10.64
coral polyp · oil and dispersant treatment	16	16	4.40	19.06
coral polyp · oil treatment	16	16	5.02	8.72
coral polyp · dispersant treatment	16	15	2.00	4.66
Polyp	10	9	7.58	20.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.