Detailed information of OS493_007488-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2929756...2935362
NR annotation: KAJ7374386.1, Splicing factor 3B subunit 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UJB0Splicing factor 3B subunit 2 OS=Mus musculus OX=10090 GN=Sf3b2 PE=2 SV=1
Q13435Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2
Q9UUI3Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap145 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004489 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04037
all species →		DUF382Domain of unknown function (DUF382) FamilyInterproscan
PF04046
all species →		PSPPSPFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006568
all species →		DomainPSP, proline-richInterproscan
IPR007180
all species →		DomainDomain of unknown function DUF382Interproscan
IPR052584
all species →		FamilyPre-mRNA Spliceosomal U2 snRNP Complex ComponentInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12785
all species →		SPLICING FACTOR 3BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005689
all species →		Cellular ComponentU12-type spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_007488-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_007488-T1 global co-expression network
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