Gene detail

Detailed information of OS493_007518-T1 in Lophelia pertusa

Genomic Location: scaffold_16:3218641...3223616
NR annotation: KAJ7374413.1, hypothetical protein OS493_007518 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62861	Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=2
P62862	Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein OS=Mus musculus OX=10090 GN=Fau PE=1 SV=2
G1T8A2	Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein OS=Oryctolagus cuniculus OX=9986 GN=FAU PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006809 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF04758 all species →	Ribosomal_S30	Ribosomal protein S30	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR006846 all species →	Family	Small ribosomal subunit protein eS30	Interproscan
IPR039415 all species →	Domain	Ubiquitin-like protein FUBI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12650 all species →	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02983	RP-S30e, RPS30; small subunit ribosomal protein S30e	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007518-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

7,886.6Max TPM

4,010.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4,122.85	4,982.00
polyp at pH7 6	18	18	4,299.83	6,044.76
coral polyp · control treatment	16	16	3,949.63	5,827.22
coral polyp · oil and dispersant treatment	16	16	3,487.48	5,214.64
coral polyp · oil treatment	16	16	4,402.45	7,886.63
coral polyp · dispersant treatment	16	16	3,321.61	7,792.76
Polyp	10	10	4,700.90	5,621.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,982.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,974.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,773.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,755.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,502.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,430.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,314.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,209.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,195.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,125.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,112.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,051.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,970.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,966.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,272.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,211.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,191.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,173.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,044.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,949.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,311.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,241.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,597.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,582.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,465.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,345.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,989.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,948.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,846.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,784.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,740.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,698.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,642.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,621.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,357.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,229.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,827.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,720.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,016.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,786.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,131.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,070.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,057.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,994.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,963.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,682.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,533.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,530.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,026.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,899.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,675.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,278.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,214.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,831.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,537.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,864.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,719.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,376.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,367.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,343.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,221.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,087.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,067.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,043.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,996.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,912.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,816.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,400.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7,886.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,764.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,256.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,019.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,975.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,578.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,249.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,142.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,952.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,864.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,668.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,627.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,521.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,415.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,374.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,142.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,792.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,331.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,677.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,277.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,043.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,839.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,820.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,809.28
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,773.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,728.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,528.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,454.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,362.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,309.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,272.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,122.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5,621.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5,555.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5,445.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5,301.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4,822.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4,422.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4,223.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3,943.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3,898.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3,775.91

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.