Gene detail

Detailed information of OS493_007519-T1 in Lophelia pertusa

Genomic Location: scaffold_16:3223873...3225816
NR annotation: KAJ7374414.1, 54S ribosomal protein L49, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13405	Large ribosomal subunit protein mL49 OS=Homo sapiens OX=9606 GN=MRPL49 PE=1 SV=1
Q5R8X0	Large ribosomal subunit protein mL49 OS=Pongo abelii OX=9601 GN=MRPL49 PE=2 SV=1
Q4R5K7	Large ribosomal subunit protein mL49 OS=Macaca fascicularis OX=9541 GN=MRPL49 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05046 all species →	Img2	Mitochondrial large subunit ribosomal protein (Img2)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007740 all species →	Family	Large ribosomal subunit protein mL49	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13477 all species →	MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17430	MRPL49, NOF1; large subunit ribosomal protein L49	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007519-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.1Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.04	18.54
polyp at pH7 6	18	18	13.52	21.67
coral polyp · control treatment	16	16	10.20	23.02
coral polyp · oil and dispersant treatment	16	16	7.24	11.63
coral polyp · oil treatment	16	16	8.89	12.77
coral polyp · dispersant treatment	16	16	5.26	10.83
Polyp	10	9	10.71	26.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.