Gene detail

Detailed information of OS493_007576-T1 in Lophelia pertusa

Genomic Location: scaffold_16:3942831...3958198
NR annotation: KAJ7374469.1, hypothetical protein OS493_007576 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QCP6	Tafazzin OS=Danio rerio OX=7955 GN=tafazzin PE=2 SV=1
Q6IV82	Tafazzin OS=Pongo pygmaeus OX=9600 GN=TAFAZZIN PE=3 SV=2
Q91WF0	Tafazzin OS=Mus musculus OX=10090 GN=Tafazzin PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007595 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01553 all species →	Acyltransferase	Acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000872 all species →	Family	Tafazzin	Interproscan
IPR002123 all species →	Domain	Phospholipid/glycerol acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12497 all species →	TAZ PROTEIN TAFAZZIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0007007 all species →	Biological Process	inner mitochondrial membrane organization	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0035965 all species →	Biological Process	cardiolipin acyl-chain remodeling	Interproscan
GO:0047184 all species →	Molecular Function	1-acylglycerophosphocholine O-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007576-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007576-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

18.9Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.13	12.34
polyp at pH7 6	18	17	6.46	12.71
coral polyp · control treatment	16	16	4.23	12.17
coral polyp · oil and dispersant treatment	16	15	2.53	4.46
coral polyp · oil treatment	16	16	4.02	6.30
coral polyp · dispersant treatment	16	15	3.64	7.91
Polyp	10	10	7.05	18.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.