Gene detail

Detailed information of OS493_007596-T1 in Lophelia pertusa

Genomic Location: scaffold_17:69899...76981
NR annotation: KAJ7364963.1, Inositol monophosphatase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29218	Inositol monophosphatase 1 OS=Homo sapiens OX=9606 GN=IMPA1 PE=1 SV=1
Q5R4X0	Inositol monophosphatase 1 OS=Pongo abelii OX=9601 GN=IMPA1 PE=2 SV=1
P20456	Inositol monophosphatase 1 OS=Bos taurus OX=9913 GN=IMPA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004624 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00459 all species →	Inositol_P	Inositol monophosphatase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033942 all species →	Family	Inositol monophosphatase	Interproscan
IPR000760 all species →	Family	Inositol monophosphatase-like	Interproscan
IPR020552 all species →	Family	Inositol monophosphatase, lithium-sensitive	Interproscan
IPR020583 all species →	Binding_site	Inositol monophosphatase, metal-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20854 all species →	INOSITOL MONOPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006020 all species →	Biological Process	inositol metabolic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0008934 all species →	Molecular Function	inositol monophosphate 1-phosphatase activity	Interproscan
GO:0046855 all species →	Biological Process	obsolete inositol phosphate dephosphorylation	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007596-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007596-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

40.5Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.90	10.61
polyp at pH7 6	18	17	8.14	15.70
coral polyp · control treatment	16	16	14.39	40.49
coral polyp · oil and dispersant treatment	16	16	11.37	26.19
coral polyp · oil treatment	16	16	12.68	32.14
coral polyp · dispersant treatment	16	16	10.81	24.89
Polyp	10	9	6.04	12.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.