Detailed information of OS493_007604-T1 in Lophelia pertusa

Genomic Location: scaffold_17:137159...143374
NR annotation: KAJ7364971.1, hypothetical protein OS493_007604 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5F3B2E3 ubiquitin-protein ligase RNF166 OS=Gallus gallus OX=9031 GN=RNF166 PE=2 SV=1
Q3KPU8E3 ubiquitin-protein ligase RNF166 OS=Xenopus laevis OX=8355 GN=rnf166 PE=2 SV=1
Q3U9F6E3 ubiquitin-protein ligase RNF166 OS=Mus musculus OX=10090 GN=Rnf166 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009555 (this species only)
Ubiquitin familyUBD|ZnF|UBZ · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05605
all species →		zf-Di19Drought induced 19 protein (Di19), zinc-bindingDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008598
all species →		DomainDrought induced 19 protein type, zinc-binding domainInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR003903
all species →		Conserved_siteUbiquitin interacting motifInterproscan
IPR051438
all species →		FamilyRNF E3 ubiquitin-protein ligaseInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46016
all species →		ZINC FINGER, RING/FYVE/PHD-TYPEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_007604-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_007604-T1 global co-expression network
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