Gene detail

Detailed information of OS493_007667-T1 in Lophelia pertusa

Genomic Location: scaffold_17:734521...745394
NR annotation: KAJ7365027.1, Asparagine-rich protein (ARP protein) [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SZN0	Venom prothrombin activator pseutarin-C non-catalytic subunit OS=Pseudonaja textilis OX=8673 PE=1 SV=1
O18806	Coagulation factor VIII OS=Canis lupus familiaris OX=9615 GN=F8 PE=2 SV=1
Q58L90	Venom prothrombin activator omicarin-C non-catalytic subunit OS=Oxyuranus microlepidotus OX=111177 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002888 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007667-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007667-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.8Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.26	12.85
polyp at pH7 6	18	18	8.64	14.68
coral polyp · control treatment	16	16	9.09	18.59
coral polyp · oil and dispersant treatment	16	16	9.64	32.79
coral polyp · oil treatment	16	16	9.12	25.03
coral polyp · dispersant treatment	16	16	10.49	22.50
Polyp	10	9	4.95	11.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.