Detailed information of OS493_007677-T1 in Lophelia pertusa

Genomic Location: scaffold_17:874088...884602
NR annotation: KAJ7365036.1, hypothetical protein OS493_007677 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D9I4TBC1 domain family member 20 OS=Mus musculus OX=10090 GN=Tbc1d20 PE=1 SV=1
Q96BZ9TBC1 domain family member 20 OS=Homo sapiens OX=9606 GN=TBC1D20 PE=1 SV=1
Q2T9Q1TBC1 domain family member 20 OS=Bos taurus OX=9913 GN=TBC1D20 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006393 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00566
all species →		RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000195
all species →		DomainRab-GAP-TBC domainInterproscan
IPR035969
all species →		Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR045913
all species →		FamilyGTPase-activating protein TBC20/Gyp8-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20913
all species →		TBC1 DOMAIN FAMILY MEMBER 20/GTPASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005096
all species →		Molecular FunctionGTPase activator activityInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0043547
all species →		Biological Processpositive regulation of GTPase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20372TBC1D20, GYP8; TBC1 domain family member 20-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_007677-T1 global co-expression network
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