Detailed information of OS493_007687-T1 in Lophelia pertusa

Genomic Location: scaffold_17:1092879...1109352
NR annotation: KAJ7365045.1, FACT complex subunit SPT16 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y5B9FACT complex subunit SPT16 OS=Homo sapiens OX=9606 GN=SUPT16H PE=1 SV=1
Q920B9FACT complex subunit SPT16 OS=Mus musculus OX=10090 GN=Supt16h PE=1 SV=2
Q9W603FACT complex subunit SPT16 OS=Xenopus laevis OX=8355 GN=supt16h PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003211 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08512
all species →		Rttp106-like_middleHistone chaperone Rttp106-like, middle domainDomainInterproscan
PF21091
all species →		SPT16_CFACT complex subunit SPT16, C-terminal domainDomainInterproscan
PF08644
all species →		SPT16FACT complex subunit (SPT16/CDC68)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013719
all species →		DomainHistone chaperone RTT106/FACT complex subunit SPT16-like, middle domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR048969
all species →		DomainFACT complex subunit SPT16, C-terminal domainInterproscan
IPR013953
all species →		DomainFACT complex subunit Spt16 domainInterproscan
IPR040258
all species →		FamilyFACT complex subunit Spt16Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13980
all species →		CDC68 RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006368
all species →		Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0031491
all species →		Molecular Functionnucleosome bindingInterproscan
GO:0035101
all species →		Cellular ComponentFACT complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_007687-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_007687-T1 global co-expression network
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