Gene detail

Detailed information of OS493_007727-T1 in Lophelia pertusa

Genomic Location: scaffold_17:1673339...1678653
NR annotation: KAJ7365081.1, hypothetical protein OS493_007727 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00747	Plasminogen OS=Homo sapiens OX=9606 GN=PLG PE=1 SV=2
Q29485	Plasminogen OS=Erinaceus europaeus OX=9365 GN=PLG PE=2 SV=1
Q5R8X6	Plasminogen OS=Pongo abelii OX=9601 GN=PLG PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000411 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007727-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007727-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

90TPM > 0

7Conditions

15.1Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	0.56	1.53
polyp at pH7 6	18	10	0.57	1.60
coral polyp · control treatment	16	14	3.28	11.56
coral polyp · oil and dispersant treatment	16	15	3.76	15.11
coral polyp · oil treatment	16	16	1.59	4.23
coral polyp · dispersant treatment	16	15	5.15	12.71
Polyp	10	8	2.41	8.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.25
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.