Gene detail

Detailed information of OS493_007729-T1 in Lophelia pertusa

Genomic Location: scaffold_17:1694010...1697160
NR annotation: KAJ7365083.1, hypothetical protein OS493_007729 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011394 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01928 all species →	CYTH	CYTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023577 all species →	Domain	CYTH domain	Interproscan
IPR033469 all species →	Homologous_superfamily	CYTH-like domain superfamily	Interproscan
IPR039582 all species →	Family	Thiamine-triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14586 all species →	THIAMINE-TRIPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0042357 all species →	Biological Process	thiamine diphosphate metabolic process	Interproscan
GO:0050333 all species →	Molecular Function	thiamine triphosphate phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05307	THTPA; thiamine-triphosphatase	EC:3.6.1.28	Thiamine metabolism	ko00730	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007729-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

12.9Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.79	5.43
polyp at pH7 6	18	17	3.17	6.00
coral polyp · control treatment	16	16	5.51	12.91
coral polyp · oil and dispersant treatment	16	16	3.51	7.49
coral polyp · oil treatment	16	16	4.87	7.38
coral polyp · dispersant treatment	16	16	1.63	3.82
Polyp	10	9	3.20	5.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.