Gene detail

Detailed information of OS493_007731-T1 in Lophelia pertusa

Genomic Location: scaffold_17:1717875...1726592
NR annotation: KAJ7365085.1, hypothetical protein OS493_007731 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92556	Engulfment and cell motility protein 1 OS=Homo sapiens OX=9606 GN=ELMO1 PE=1 SV=2
Q8BPU7	Engulfment and cell motility protein 1 OS=Mus musculus OX=10090 GN=Elmo1 PE=1 SV=2
Q499U2	Engulfment and cell motility protein 3 OS=Rattus norvegicus OX=10116 GN=Elmo3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04727 all species →	ELMO_CED12	ELMO/CED-12 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006816 all species →	Domain	ELMO domain	Interproscan
IPR050868 all species →	Family	Engulfment and cell motility domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12771 all species →	ENGULFMENT AND CELL MOTILITY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007731-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007731-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

36.8Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.28	14.49
polyp at pH7 6	18	17	9.86	16.53
coral polyp · control treatment	16	16	20.07	36.79
coral polyp · oil and dispersant treatment	16	16	16.97	22.83
coral polyp · oil treatment	16	16	14.85	24.03
coral polyp · dispersant treatment	16	16	17.13	34.67
Polyp	10	9	5.21	12.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.03
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.