Gene detail

Detailed information of OS493_007770-T1 in Lophelia pertusa

Genomic Location: scaffold_17:2331558...2345668
NR annotation: KAJ7365121.1, Target of rapamycin complex 2 subunit mapkap1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6S3	Target of rapamycin complex 2 subunit MAPKAP1 OS=Gallus gallus OX=9031 GN=MAPKAP1 PE=2 SV=1
A4IIM3	Target of rapamycin complex 2 subunit MAPKAP1 OS=Xenopus tropicalis OX=8364 GN=mapkap1 PE=2 SV=1
Q8BKH7	Target of rapamycin complex 2 subunit MAPKAP1 OS=Mus musculus OX=10090 GN=Mapkap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004519 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16979 all species →	SIN1_PH	SAPK-interacting protein 1 (Sin1), Pleckstrin-homology	Domain	Interproscan
PF16978 all species →	CRIM	SAPK-interacting protein 1 (Sin1), middle CRIM domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR031313 all species →	Domain	SAPK-interacting protein 1, Pleckstrin-homology domain	Interproscan
IPR031567 all species →	Domain	Sin1, middle CRIM domain	Interproscan
IPR008828 all species →	Family	TORC2 component Sin1/Avo1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13335 all species →	TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007770-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007770-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.6Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.79	16.17
polyp at pH7 6	18	18	11.48	15.26
coral polyp · control treatment	16	16	18.09	36.58
coral polyp · oil and dispersant treatment	16	16	14.67	30.98
coral polyp · oil treatment	16	16	18.27	35.54
coral polyp · dispersant treatment	16	16	10.32	17.38
Polyp	10	10	23.91	31.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	29.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.