Gene detail

Detailed information of OS493_007857-T1 in Lophelia pertusa

Genomic Location: scaffold_17:3814883...3826301
NR annotation: KAJ7365206.1, Condensin-2 complex subunit G2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005506 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_007857-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_007857-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR16199 all species →	CONDENSIN-2 COMPLEX SUBUNIT G2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000070 all species →	Biological Process	mitotic sister chromatid segregation	Interproscan
GO:0000796 all species →	Cellular Component	condensin complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007857-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007857-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.8Max TPM

4.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.89	9.91
polyp at pH7 6	18	17	4.55	8.10
coral polyp · control treatment	16	16	3.55	12.93
coral polyp · oil and dispersant treatment	16	16	3.15	15.66
coral polyp · oil treatment	16	16	3.87	10.93
coral polyp · dispersant treatment	16	16	3.15	6.69
Polyp	10	10	9.28	20.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.