Gene detail

Detailed information of OS493_007861-T1 in Lophelia pertusa

Genomic Location: scaffold_17:3871661...3874557
NR annotation: KAJ7365209.1, hypothetical protein OS493_007861 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D9HP23	Cell number regulator 7 OS=Zea mays OX=4577 GN=CNR7 PE=2 SV=1
D9HP25	Cell number regulator 9 OS=Zea mays OX=4577 GN=CNR9 PE=2 SV=1
B4FF80	Cell number regulator 5 OS=Zea mays OX=4577 GN=CNR5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000625 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15907 all species →	DUF614 FAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_007861-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007861-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007861-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

272.2Max TPM

137.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	109.09	137.41
polyp at pH7 6	18	18	89.82	140.91
coral polyp · control treatment	16	16	185.42	266.28
coral polyp · oil and dispersant treatment	16	16	127.98	209.58
coral polyp · oil treatment	16	16	202.09	270.47
coral polyp · dispersant treatment	16	16	115.77	272.25
Polyp	10	10	148.98	217.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	137.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	133.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.86
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	109.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	266.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	247.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	244.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	225.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	215.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	208.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	202.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	197.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	184.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	171.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	209.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	179.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	155.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	270.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	254.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	248.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	236.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	236.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	215.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	208.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	206.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	183.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	175.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	167.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	156.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	272.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	201.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	143.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	217.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	205.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	183.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	174.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	149.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	141.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	123.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	110.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	102.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	80.32

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.