Gene detail

Detailed information of OS493_007880-T1 in Lophelia pertusa

Genomic Location: scaffold_18:133682...154099
NR annotation: KAJ7337727.1, hypothetical protein OS493_007880 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C0K5	Solute carrier family 25 member 16 OS=Mus musculus OX=10090 GN=Slc25a16 PE=1 SV=1
P16260	Solute carrier family 25 member 16 OS=Homo sapiens OX=9606 GN=SLC25A16 PE=1 SV=3
Q01888	Solute carrier family 25 member 16 OS=Bos taurus OX=9913 GN=SLC25A16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002170 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR002167 all species →	Family	Solute carrier family 25 member 16-like	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24089 all species →	SOLUTE CARRIER FAMILY 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0015228 all species →	Molecular Function	coenzyme A transmembrane transporter activity	Interproscan
GO:1990559 all species →	Biological Process	mitochondrial coenzyme A transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15084	SLC25A16, GDA, LEU5; solute carrier family 25 (mitochondrial carrier protein), member 16	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007880-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

244.8Max TPM

33.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.24	40.10
polyp at pH7 6	18	17	23.12	35.39
coral polyp · control treatment	16	16	36.96	167.35
coral polyp · oil and dispersant treatment	16	16	48.85	244.84
coral polyp · oil treatment	16	16	26.63	79.48
coral polyp · dispersant treatment	16	16	61.99	140.92
Polyp	10	9	8.00	18.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	167.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	244.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.59
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.