Gene detail

Detailed information of OS493_007886-T1 in Lophelia pertusa

Genomic Location: scaffold_18:246873...248205
NR annotation: KAJ7337733.1, hypothetical protein OS493_007886 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66I22	Serrate RNA effector molecule homolog OS=Danio rerio OX=7955 GN=srrt PE=2 SV=1
Q60436	Serrate RNA effector molecule homolog (Fragment) OS=Cricetulus griseus OX=10029 GN=SRRT PE=2 SV=3
Q5R539	Serrate RNA effector molecule homolog OS=Pongo abelii OX=9601 GN=SRRT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002648 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04959 all species →	ARS2	Arsenite-resistance protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039727 all species →	Family	SERRATE/Ars2	Interproscan
IPR007042 all species →	Domain	SERRATE/Ars2 , C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13165 all species →	ARSENITE-RESISTANCE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10704	UBE2V; ubiquitin-conjugating enzyme E2 variant	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_007886-T1 global co-expression network