Gene detail

Detailed information of OS493_007898-T1 in Lophelia pertusa

Genomic Location: scaffold_18:450130...453537
NR annotation: KAJ7337745.1, hypothetical protein OS493_007898 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92551	Inositol hexakisphosphate kinase 1 OS=Homo sapiens OX=9606 GN=IP6K1 PE=1 SV=3
Q6PD10	Inositol hexakisphosphate kinase 1 OS=Mus musculus OX=10090 GN=Ip6k1 PE=2 SV=1
Q9ESM0	Inositol hexakisphosphate kinase 1 OS=Rattus norvegicus OX=10116 GN=Ip6k1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005190 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03770 all species →	IPK	Inositol polyphosphate kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005522 all species →	Family	Inositol polyphosphate kinase	Interproscan
IPR038286 all species →	Homologous_superfamily	Inositol polyphosphate kinase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12400 all species →	INOSITOL POLYPHOSPHATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008440 all species →	Molecular Function	inositol-1,4,5-trisphosphate 3-kinase activity	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0032958 all species →	Biological Process	inositol phosphate biosynthetic process	Interproscan
GO:0051765 all species →	Molecular Function	inositol tetrakisphosphate kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007898-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007898-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

101.5Max TPM

12.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.80	30.18
polyp at pH7 6	18	18	13.62	27.20
coral polyp · control treatment	16	16	10.99	21.56
coral polyp · oil and dispersant treatment	16	16	6.84	13.04
coral polyp · oil treatment	16	16	10.56	20.79
coral polyp · dispersant treatment	16	16	3.78	9.43
Polyp	10	10	38.96	101.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.48
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.56
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	101.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	56.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	49.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	28.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.