Gene detail

Detailed information of OS493_007903-T1 in Lophelia pertusa

Genomic Location: scaffold_18:566313...582351
NR annotation: KAJ7337750.1, Extracellular sulfatase Sulf-1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_007903-T1

ATGGCGAAAAACTTGGTGGTTTTCGCTGTACTCCTGTTGTGTCACTTAACATCAGCTGCCGCACGCAAACCAAAGAATAATTTTCGAAGCGGAACAGGATCGACGAGACGACCCAACATAGTTTTTATTCTCGCAGATGACTTAGACAGTGAGCTAGGATCTCCGAATGTCATGACGAAAATGCACAATATTCTGCGACAGGAAGGGGCAGAGTTTGTCAACGCGTTCGTCACTACGCCGATGTGCTGTCCTTCCCGCGCAAGTATTTTGACTGGTTCATACGCTCATAACCATAACACCTTCACGAATAATTTGAATTGTTCATCTCAGTCATGGAGGAAAGGACCAGAGAAAAAAAGTTACGCAAGATACCTGCAATTATCAGGATATGTAACGGGTTATTTTGGCAAGTATCTGAACGAGTACGACGGAAGCTGGGTCCCAGTGGGCTGGAACAGATGGGAAGGACTCCTACACAACTCCAAATTCTACAACTACACCCTGAGACATAACACGTATAAAGAGCGACACAAGATGAGTTATGAACAAGATTACTTCACTGATCTCATCACCAACCGCAGTATTTCTTTCATACGGCGGAGCAAAGCAGCCAAACCTCACAGTCCTTTTCTAGCTGTTGTAAGTCATTCAGCCCCTCATGGCCCGGAGACAGCTGCCCCACAGTATAGCAACGCATTTCCTAATGCGCAAGCTCCGAGGTATGACAACTGGAATTTTATTTCGATGGACAAACAATGGATCTTAAGAGAGACATCACCAATGGACGCACAAAAAATAGCGTTTGTAGATCTGTTGCACCGCCGCCGCCTTCAGACTCTGTTGTCAGTTGATGACTCCATTCAGCGAATCTTCCGCACGCTACAGTCGCTGGGAATTGAAAACGAAACATACATCTTCTTTACATCAGATCACGGCTACCATCTCGGGCAGTTCGGTTTGGTCAAAGGAAAGTCTATGCCATTTGAGAGCGATATCAGAGTACCTTTTTACGTCAGAGGTCCGATTATTCCCAAAAACATCAGGATGAAAGACATGGTTTTAAACATTGACTTGGCGCCCACATTTTTGGATATTGCTGGCATGAAAATTCCTAAAGACATGGACGGTGCTTCTGTTATGAGACTTTTCAGAAAACCAAGAGCTGGAAGGAGAGCAAAAAGAAGGACGCATGTTCTATGGAGGGACACAATTCTCATTGAAAGGTCTCGAGGCTGGAAGAGGACAAAAAGCTTGTTAGAAGGAAGATCAAAGAACAAGACAATGACAGCTAAAGAGCGCAAGATGACCGTACTAGAGAGAATCTGCTCCAGGCCCAAATACCAGTCACCCTGCCAACCTAATCAGCTGTGGGAATGTGTGACAGTTGATCGCAGACCAAGACTGAGAAAGTGTAGGAGAAATGCCACGCTTATGGCAAAGACTACCGCAACGACCCGACCCACCACATCCACCCTTCCTACCACTCCTGTGAAAATGTGTGTTTGCATGAAGCCGAAACCAGGCACTGAGATGTATGAAAACCAGAGCGACATGCTACCCACTTATGATGATAAATTGATTGTGAGTGGCATAGATTATTTGACAAGGGAACTGAGACGGCGATCCAAGAGGACTCGTCACTCTAGCTACAGCTCAAAAAAGAAAGCAAACGAATTCAACGCCAAAAGATACCAGAAAGAATTAGCCCGGGCGCTTAAACTTCAGAATCGACGCGCCAATTCAAAAGTGCTCATTCGAACTCCCGATACAAACACAAAACCGGAATCTAACGCAACTGGAACTTCTCCCGAATCTTTTGGAGTGCAAGAAGCCGTGGAGGAAAAACTTGGAAAACTCAAAGAAAAAATTCAAGAGATACGAATGCGTCTGGGAGCTTTGCGAGACCGAAGGAAGAAACTGCTTCTGATCAGCGCACGTGATCGGTATATAGAGTACCCGTGTCCTTGTAACCATGGCAATGATACCAAGCTCGAGAAGGCGACCACAGAAAACGTTGGTAATGGTGCATACGACCATGGTGCTGATAAAGAAGACGAAAATAGTGATGATCCATTTCAGATATCTCCACTGAGAAGACGAAATAAACCACCCAAGGCAACATCCCGTAAGACAGACACCAAGAAAAAGAAGGTTAAGCCAAGACGAAGTAAATGTGCAAGTCCCGGCATGAACTGCTTTTACCAGACAAACGATCACTGGAAACTGCCACCTCTGTGGACAGGAGGAGAATTCTGTTTCTGTCCCAACGCAGCCAATAATTCTTACTGGTGCCTGCGGACAATAAATGCCACACACAACTTCCTCTACTGCGAGTTTATCACACATTTTTACGAGTACTTTGACCTCAACAAAGATCCATACCAGCTGTACAACGTAATCGATGAAGTGAGCCCTGCTGTTTTGTTGGAACTTCACCAACAGCTCGCCAGAATGAGAGGTTGCAAGGGAGAGCACTGTACGCACTATCATGGCAAGAAATATCCACAACATACAACTTCCCAGCCTGCAACAACCAAGGCAAGTACAACGACTGTTCAGAACACAAGGCAGCGCATAACAGATATGACACACTCACCGACACTCTCGTCAAATATGAAAACACCTTCAGAAAGCTCAGCTAGCGCTTTGACATCCGAAAGATCTTCGGAAGACCTCGTAAATCGTTCGAAAGTTGTCGTGAATACTCCGGGAAGTGCCGACAATACGACGGAATCTTCGGAGGATTTACTTTTTACAACTTCTGCGCCAACGGAAGCAATACTGGAAACAGTAGAACAGTCAACTGGTGAGAAACCACCAGAAAATACAGTAATACCCGTGACTGGTGCTGATGACGTGTCGACAGTCCTCGTCAAGTCTTCGGAGCCCGACGCGAGTTCTTTAGAAACGAACGTTTCTTCAATTCTACCCACGTCGGCTTCTAGTGAAGAGAATACAAGCGAAATGAATTTAAAAGAGAGTTTTAAAGTGAAACCAACAAGAGGAAAAGCACCCAAGCGGCGAAAAAACGGAGAACGAGAAAACAGAAAAAAGAAGACACTTCCATGGATAAAGAAACACAAAGAAGGAAATCTAAAAATAAATCTTCTGTCAAGGAAAGGTTGCCGTTACCAACAGAAAACACGAAGGAGTTTGAAGAGAAGGAAACTCAAAAAACTTCCAAGAAACCGAGAAAAGCAAAGAAGAAATCCTCGGAAAACGAAAGCTCTTTGA

Transcript

OS493_007903-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90XB6	Extracellular sulfatase Sulf-1 OS=Coturnix coturnix OX=9091 GN=SULF1 PE=1 SV=1
Q8IWU5	Extracellular sulfatase Sulf-2 OS=Homo sapiens OX=9606 GN=SULF2 PE=1 SV=1
Q8CFG0	Extracellular sulfatase Sulf-2 OS=Mus musculus OX=10090 GN=Sulf2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR024607 all species →	Conserved_site	Sulfatase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43108 all species →	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005539 all species →	Molecular Function	glycosaminoglycan binding	Interproscan
GO:0008449 all species →	Molecular Function	N-acetylglucosamine-6-sulfatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14607	SULF; extracellular sulfatase Sulf	EC:3.1.6.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_007903-T1 global co-expression network