Gene detail

Detailed information of OS493_007934-T1 in Lophelia pertusa

Genomic Location: scaffold_18:1109850...1116942
NR annotation: KAJ7337778.1, hypothetical protein OS493_007934 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16609	Putative apolipoprotein(a)-like protein 2 OS=Homo sapiens OX=9606 GN=LPAL2 PE=5 SV=1
Q7M323	Plasminogen (Fragment) OS=Capra hircus OX=9925 GN=PLG PE=1 SV=1
P08519	Apolipoprotein(a) OS=Homo sapiens OX=9606 GN=LPA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000411 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_007934-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007934-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

46.6Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.74	8.71
polyp at pH7 6	18	16	5.71	11.97
coral polyp · control treatment	16	16	13.03	23.86
coral polyp · oil and dispersant treatment	16	16	16.56	38.31
coral polyp · oil treatment	16	16	11.62	24.26
coral polyp · dispersant treatment	16	16	14.94	46.61
Polyp	10	9	2.31	4.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.88
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.