Gene detail

Detailed information of OS493_007955-T1 in Lophelia pertusa

Genomic Location: scaffold_18:1851079...1862101
NR annotation: KAJ7337798.1, hypothetical protein OS493_007955 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3K2	Growth hormone-inducible transmembrane protein OS=Homo sapiens OX=9606 GN=GHITM PE=1 SV=2
Q91VC9	Growth hormone-inducible transmembrane protein OS=Mus musculus OX=10090 GN=Ghitm PE=1 SV=1
Q5XIA8	Growth hormone-inducible transmembrane protein OS=Rattus norvegicus OX=10116 GN=Ghitm PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006996 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01027 all species →	Bax1-I	Inhibitor of apoptosis-promoting Bax1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006214 all species →	Family	Bax inhibitor 1-related	Interproscan
IPR035871 all species →	Domain	Growth hormone-inducible transmembrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23291 all species →	BAX INHIBITOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21890	GHITM, DERP2, TMBIM5; growth hormone-inducible transmembrane protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007955-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

145.9Max TPM

49.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.04	51.46
polyp at pH7 6	18	18	33.92	52.89
coral polyp · control treatment	16	16	64.46	128.40
coral polyp · oil and dispersant treatment	16	16	65.85	145.94
coral polyp · oil treatment	16	16	51.10	63.65
coral polyp · dispersant treatment	16	16	52.20	78.08
Polyp	10	10	40.03	83.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	145.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	83.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	57.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	47.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	46.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	40.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	36.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.