Gene detail

Detailed information of OS493_007958-T1 in Lophelia pertusa

Genomic Location: scaffold_18:1905551...1931160
NR annotation: KAJ7337801.1, hypothetical protein OS493_007958 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1K5T6	Protein nucleotidyltransferase YdiU OS=Azoarcus sp. (strain BH72) OX=418699 GN=ydiU PE=3 SV=1
A5FG48	Protein nucleotidyltransferase YdiU OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=ydiU PE=3 SV=1
Q1H0D2	Protein nucleotidyltransferase YdiU OS=Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT) OX=265072 GN=ydiU PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001182 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02696 all species →	SelO	Protein adenylyltransferase SelO	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003846 all species →	Family	Protein adenylyltransferase SelO	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12153 all species →	SELENOPROTEIN O	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_007958-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08997	SELENOO, selO; protein adenylyltransferase	EC:2.7.7.108	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_007958-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

77.0Max TPM

18.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.65	35.26
polyp at pH7 6	18	18	20.31	32.39
coral polyp · control treatment	16	16	16.89	33.01
coral polyp · oil and dispersant treatment	16	16	11.93	33.91
coral polyp · oil treatment	16	16	17.57	34.95
coral polyp · dispersant treatment	16	16	13.74	31.69
Polyp	10	10	36.07	76.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	76.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	65.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	47.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	45.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	36.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.