Gene detail

Detailed information of OS493_008096-T1 in Lophelia pertusa

Genomic Location: scaffold_18:3771087...3778381
NR annotation: KAJ7337937.1, hypothetical protein OS493_008096 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006358 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00452 all species →	Bcl-2	Apoptosis regulator proteins, Bcl-2 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046371 all species →	Domain	Bcl-2, Bcl-2 homology region 1-3	Interproscan
IPR036834 all species →	Homologous_superfamily	Bcl-2-like superfamily	Interproscan
IPR002475 all species →	Family	Bcl2-like	Interproscan
IPR042398 all species →	Family	Bcl-2-like protein 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15758 all species →	BCL-2-LIKE PROTEIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008096-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008096-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

64.5Max TPM

23.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.57	15.68
polyp at pH7 6	18	18	14.45	21.36
coral polyp · control treatment	16	16	25.05	50.53
coral polyp · oil and dispersant treatment	16	16	33.98	64.52
coral polyp · oil treatment	16	16	25.48	31.76
coral polyp · dispersant treatment	16	16	37.82	57.52
Polyp	10	10	17.08	30.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.76
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.