Gene detail

Detailed information of OS493_008099-T1 in Lophelia pertusa

Genomic Location: scaffold_18:3793299...3796951
NR annotation: KAJ7337940.1, hypothetical protein OS493_008099 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H936	Mitochondrial glutamate carrier 1 OS=Homo sapiens OX=9606 GN=SLC25A22 PE=1 SV=1
Q9DB41	Mitochondrial glutamate carrier 2 OS=Mus musculus OX=10090 GN=Slc25a18 PE=1 SV=4
A0A0G2K5L2	Mitochondrial glutamate carrier 1 OS=Rattus norvegicus OX=10116 GN=Slc25a22 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005570 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR051028 all species →	Family	Mitochondrial Solute Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45678 all species →	MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005313 all species →	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0015183 all species →	Molecular Function	L-aspartate transmembrane transporter activity	Interproscan
GO:0015810 all species →	Biological Process	aspartate transmembrane transport	Interproscan
GO:0015813 all species →	Biological Process	L-glutamate transmembrane transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0043490 all species →	Biological Process	malate-aspartate shuttle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15107	SLC25A18_22, GC; solute carrier family 25 (mitochondrial glutamate transporter), member 18/22	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008099-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

226.1Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.13	8.76
polyp at pH7 6	18	18	7.29	13.13
coral polyp · control treatment	16	16	18.37	226.14
coral polyp · oil and dispersant treatment	16	16	17.70	224.13
coral polyp · oil treatment	16	16	3.83	7.57
coral polyp · dispersant treatment	16	16	3.39	9.86
Polyp	10	9	3.22	7.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	226.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	224.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.