Gene detail

Detailed information of OS493_008123-T1 in Lophelia pertusa

Genomic Location: scaffold_18:3923978...3930197
NR annotation: KAJ7337956.1, Translation initiation factor eIF-2B subunit epsilon [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47823	Translation initiation factor eIF2B subunit epsilon OS=Oryctolagus cuniculus OX=9986 GN=EIF2B5 PE=1 SV=1
Q8CHW4	Translation initiation factor eIF2B subunit epsilon OS=Mus musculus OX=10090 GN=Eif2b5 PE=1 SV=1
Q64350	Translation initiation factor eIF2B subunit epsilon OS=Rattus norvegicus OX=10116 GN=Eif2b5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004723 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00483 all species →	NTP_transferase	Nucleotidyl transferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051956 all species →	Family	eIF2B Complex Subunit Epsilon	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR005835 all species →	Domain	Nucleotidyl transferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45887 all species →	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005851 all species →	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008123-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008123-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

19.8Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.16	13.86
polyp at pH7 6	18	17	9.18	15.10
coral polyp · control treatment	16	16	12.00	19.81
coral polyp · oil and dispersant treatment	16	16	11.39	17.00
coral polyp · oil treatment	16	16	9.42	16.41
coral polyp · dispersant treatment	16	16	9.88	16.15
Polyp	10	9	10.56	19.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.